JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RICTOR_chr5_38932920_39079399	0/0	t0032	4408	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0033	4407	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0034	4407	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0035	4407	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0036	4407	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0037	4407	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0038	4407	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0039	4408	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0040	4408	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0041	4407	1	0	0	0	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0042	4407	1	0	0	0	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0043	4407	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0044	4407	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0045	4407	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	t0046	4407	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RIDA_chr8_98097344_98122171	1/1	t0001	574	373	69	51	206	10	35	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0002	574	56	13	19	11	4	9	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0003	574	21	5	8	0	4	4	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0004	574	4	4	0	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0005	574	1	0	1	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0006	574	1	0	1	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0007	551	1	0	0	1	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	t0008	574	1	1	0	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIF1_chr2_151404902_151487172	0/0	t0001	7245	75	0	26	40	5	4	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/1	t0002	7245	58	0	15	30	6	6	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	1/0	t0003	7244	45	0	8	29	2	5	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0004	7244	20	15	0	5	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0005	7243	18	0	0	16	0	2	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0006	7243	16	0	1	13	0	2	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0007	7245	16	14	2	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0008	7239	8	0	7	0	0	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0009	7245	7	0	0	7	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0010	7245	5	0	0	3	1	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0011	7241	5	0	0	5	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0012	7245	4	0	1	2	0	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0013	7245	4	0	0	4	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0014	7244	4	0	0	0	0	4	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0015	7242	4	0	0	0	0	4	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0016	7245	4	4	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0017	7245	4	2	0	0	1	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0018	7244	3	0	0	0	1	2	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0019	7244	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0020	7245	3	0	0	3	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0021	7243	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0022	7243	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0023	7242	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0024	7242	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0025	7245	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0026	7244	3	2	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0027	7245	3	3	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172