JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIF1_chr2_151404902_151487172	0/0	t0028	7244	3	2	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0029	7241	2	0	0	2	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0030	7245	2	0	1	0	0	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0031	7245	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0032	7244	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0033	7245	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0034	7245	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0035	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0036	7244	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0037	7244	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0038	7241	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0039	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0040	7245	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0041	7245	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0042	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0043	7245	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0044	7245	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0045	7243	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0046	7243	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0047	7245	1	0	0	0	0	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0048	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0049	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0050	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0051	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0052	7244	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0053	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0054	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0055	7244	1	0	0	0	1	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0056	7245	1	0	0	0	1	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0057	7244	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0058	7244	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0059	7247	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0060	7243	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0061	7243	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0062	7243	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0063	7244	1	0	0	0	0	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0064	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0065	7245	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0066	7245	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0067	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0068	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0069	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0070	7245	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0071	7244	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	t0072	7244	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIGI_chr9_32450302_32531196	1/0	t0001	1851	122	30	26	48	2	15	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0002	1851	47	2	7	36	1	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/1	t0003	1850	43	0	9	27	3	3	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0004	1851	30	8	5	9	1	7	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	t0005	1851	19	3	11	0	4	1	copy fasta	RIGI	chr9	32450302	32531196