JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RIT2_chr18_42738227_43120685	0/0	t0003	433	7	7	0	0	0	0	copy fasta	RIT2	chr18	42738227	43120685
RIT2_chr18_42738227_43120685	0/0	t0004	433	1	1	0	0	0	0	copy fasta	RIT2	chr18	42738227	43120685
RIT2_chr18_42738227_43120685	0/0	t0005	433	1	1	0	0	0	0	copy fasta	RIT2	chr18	42738227	43120685
RIT2_chr18_42738227_43120685	0/0	t0006	433	1	1	0	0	0	0	copy fasta	RIT2	chr18	42738227	43120685
RITA1_chr12_113180721_113197368	1/0	t0001	1049	153	9	33	87	3	20	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/1	t0002	1049	119	38	32	20	10	18	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0003	1049	68	12	1	51	0	4	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0004	1049	15	15	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0005	1049	10	0	0	10	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0006	1049	5	0	1	0	1	3	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0007	1049	3	3	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0008	1049	3	3	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0009	1049	3	1	1	0	1	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0010	1049	2	2	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0011	1049	1	0	0	1	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0012	1049	1	0	0	1	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0013	1049	1	0	0	0	1	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0014	1049	1	0	0	0	0	1	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	t0015	1049	1	1	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RLBP1_chr15_89204869_89226579	0/1	t0001	685	269	45	40	143	13	27	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0002	685	103	26	21	39	3	14	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	1/0	t0003	685	19	7	5	1	0	5	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0004	685	7	7	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0005	685	4	4	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0006	685	3	3	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0007	684	3	3	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0008	685	2	2	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0009	685	2	2	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0010	685	1	0	0	1	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	t0011	685	1	1	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLF_chr1_40156387_40245921	1/1	t0001	488	338	98	40	144	14	40	copy fasta	RLF	chr1	40156387	40245921
RLIG1_chr12_88030536_88055160	1/1	t0001	1852	284	60	60	127	9	26	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0002	1852	18	0	0	18	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0003	1846	16	13	3	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0004	1848	12	1	2	9	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0005	1852	7	0	0	6	1	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0006	1852	6	6	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0007	1857	3	3	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0008	1848	2	2	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0009	1852	2	2	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0010	1848	1	1	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0011	1852	1	0	0	1	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0012	1852	1	0	1	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0013	1852	1	0	0	1	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0014	1852	1	1	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	t0015	1852	1	1	0	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIM_chrX_74577976_74619624	1/1	t0001	8691	160	19	35	81	7	16	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0002	8691	13	3	0	4	0	6	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0003	8691	8	1	4	0	0	3	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	t0004	8691	7	4	3	0	0	0	copy fasta	RLIM	chrX	74577976	74619624