JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPS3_chr11_75394518_75411907	0/0	t0009	1328	1	0	0	1	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	t0010	1328	1	1	0	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS4X_chrX_72267042_72282248	1/0	t0001	683	184	42	41	72	7	21	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/1	t0002	683	93	0	10	73	0	9	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0003	683	20	18	2	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0004	683	6	6	0	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0005	683	5	5	0	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0006	684	3	3	0	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0007	683	2	2	0	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0008	682	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0009	682	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	t0010	682	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4Y1_chrY_2836602_2872268	1/1	t0001	398	128	17	20	68	5	16	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y1_chrY_2836602_2872268	0/0	t0002	398	1	1	0	0	0	0	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y2_chrY_20751108_20786032	1/1	t0001	57	131	18	20	70	5	16	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS5_chr19_58382269_58399804	1/1	t0001	126	220	48	46	93	11	20	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0002	126	203	42	35	95	7	24	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0003	126	4	4	0	0	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0004	126	2	1	1	0	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0005	126	1	1	0	0	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0006	126	1	0	0	1	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	t0007	126	1	0	0	1	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS6KA1_chr1_26524761_26580025	0/0	t0001	985	128	16	22	67	2	21	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	1/0	t0002	985	83	23	16	28	2	13	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0003	985	58	36	14	0	7	1	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/1	t0004	985	21	0	3	14	1	2	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0005	985	11	0	3	3	2	3	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0006	985	9	6	2	0	0	1	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0007	985	6	1	5	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0008	985	4	4	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0009	985	2	2	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0010	985	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0011	985	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0012	985	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0013	985	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0014	985	1	0	0	0	0	1	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0015	985	1	0	1	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0016	985	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	t0017	985	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA2_chr6_166404364_166632251	0/1	t0001	3630	76	13	26	22	5	9	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0002	3630	35	5	11	17	1	1	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0003	3630	23	0	6	15	0	2	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0004	3629	10	9	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0005	3630	9	8	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0006	3631	7	7	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	1/0	t0007	3631	7	0	5	0	0	1	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0008	3631	6	5	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0009	3630	6	0	2	4	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0010	3630	5	5	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	t0011	3630	4	0	1	3	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251