Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACKR4_chr3_132592270_132607644	0/1	t0002	1259	129	38	7	72	4	7	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0003	1259	33	1	6	23	0	3	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0004	1259	19	6	2	8	0	3	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0005	1259	9	0	2	7	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0006	1259	6	0	3	0	1	2	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0007	1259	2	2	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0008	1258	1	1	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0009	1259	1	0	0	0	0	1	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0010	1258	1	1	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0011	1260	1	1	0	0	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACKR4_chr3_132592270_132607644	0/0	t0012	1258	1	0	0	1	0	0	copy fasta	ACKR4	chr3	132592270	132607644
ACLY_chr17_41861918_41923951	0/1	t0001	988	205	57	54	64	7	22	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0002	989	31	7	6	15	1	2	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0003	989	29	0	5	18	1	5	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	1/0	t0004	988	13	9	2	0	0	1	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0005	989	6	3	2	0	1	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0006	989	3	3	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0007	988	2	0	0	2	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0008	989	2	2	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0009	988	1	0	1	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0010	988	1	0	0	1	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACLY_chr17_41861918_41923951	0/0	t0011	988	1	1	0	0	0	0	copy fasta	ACLY	chr17	41861918	41923951
ACMSD_chr2_134833616_134907034	1/1	t0001	242	382	80	66	186	10	38	copy fasta	ACMSD	chr2	134833616	134907034
ACO1_chr9_32379643_32459769	0/0	t0001	4775	46	7	1	30	0	8	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0002	4774	32	2	6	23	1	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0003	4775	30	12	9	8	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/1	t0004	4776	24	0	7	12	4	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0005	4776	14	1	0	6	0	7	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0006	4775	14	1	3	3	1	6	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0007	4780	12	1	4	0	3	4	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0008	4780	11	10	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0009	4776	11	0	0	11	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0010	4775	8	0	1	5	0	2	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0011	4776	6	0	3	0	2	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0012	4777	6	0	2	3	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0013	4778	6	6	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0014	4774	6	3	1	1	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0015	4776	6	1	1	1	0	3	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0016	4775	5	0	0	4	1	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0017	4775	5	0	0	5	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0018	4779	5	5	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0019	4774	4	2	0	1	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0020	4775	4	0	3	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0021	4775	4	0	0	4	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0022	4775	4	0	0	4	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0023	4775	4	2	2	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0024	4776	3	3	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0025	4777	3	0	0	3	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0026	4775	3	0	2	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0027	4778	3	2	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769