JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPSA2_chr19_23758004_23833868	0/0	t0128	2816	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0129	2815	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0130	2816	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0131	2814	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0132	2817	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0133	2813	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0134	2811	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0135	2810	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0136	2808	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0137	2810	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0138	2811	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0139	2810	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0140	2811	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0141	2810	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0142	2811	1	0	0	0	1	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0143	2814	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0144	2813	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	t0145	2809	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	1/0	t0146	1253	1	0	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA_chr3_39401720_39417542	1/1	t0001	253	193	39	28	94	9	21	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	t0002	253	187	52	38	73	9	15	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	t0003	253	1	1	0	0	0	0	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	t0004	253	1	0	0	1	0	0	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	t0005	253	1	1	0	0	0	0	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	t0006	253	1	1	0	0	0	0	copy fasta	RPSA	chr3	39401720	39417542
RPTN_chr1_152148595_152164228	0/0	t0001	1215	237	38	50	109	7	33	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	1/1	t0002	1215	143	31	21	70	10	9	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0003	1214	26	9	5	8	0	4	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0004	1215	6	6	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0005	1215	3	0	0	3	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0006	1215	2	0	0	1	1	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0007	1217	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0008	1217	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0009	1215	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0010	1217	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	t0011	1214	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTOR_chr17_80539838_80971368	0/0	t0001	2831	11	2	1	5	0	3	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0002	2833	11	1	7	2	1	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0003	2833	10	1	3	1	3	2	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0004	2831	9	0	2	3	3	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/1	t0005	2834	6	0	3	1	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0006	2831	5	4	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0007	2831	5	5	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0008	2833	5	0	3	2	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0009	2831	5	0	1	4	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0010	2831	5	0	0	2	1	2	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0011	2834	4	1	1	0	0	2	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0012	2831	4	4	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0013	2831	4	1	2	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	t0014	2832	3	0	2	0	1	0	copy fasta	RPTOR	chr17	80539838	80971368