JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSBN1_chr1_113756832_113817476	0/0	t0029	4208	1	0	0	0	0	1	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	t0030	4214	1	1	0	0	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	t0031	4208	1	0	0	0	0	1	copy fasta	RSBN1	chr1	113756832	113817476
RSC1A1_chr1_15654713_15667033	1/1	t0001	468	352	92	71	132	16	39	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0002	468	5	4	1	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0003	468	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0004	468	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0005	468	1	0	0	0	0	1	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0006	468	1	0	0	1	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	t0007	468	1	0	0	1	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSF1_chr11_77655009_77825722	0/1	t0001	6920	75	15	9	44	5	1	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0002	6918	61	16	11	19	3	12	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0003	6910	57	15	9	32	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	1/0	t0004	6917	50	1	10	22	4	12	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0005	6920	10	0	1	9	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0006	6918	6	5	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0007	6915	6	0	0	6	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0008	6920	5	0	3	0	0	2	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0009	6918	4	4	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0010	6910	3	2	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0011	6917	3	0	1	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0012	6920	3	2	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0013	6920	3	3	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0014	6913	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0015	6910	2	0	0	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0016	6916	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0017	6912	2	1	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0018	6911	2	0	1	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0019	6917	2	0	0	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0020	6918	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0021	6918	2	0	1	0	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0022	6918	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0023	6922	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0024	6910	2	0	0	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0025	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0026	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0027	6924	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0028	6917	1	0	0	0	0	1	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0029	6914	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0030	6910	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0031	6910	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0032	6915	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0033	6910	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0034	6913	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0035	6910	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0036	6911	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0037	6912	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0038	6917	1	0	0	0	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0039	6916	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0040	6918	1	0	0	0	0	1	copy fasta	RSF1	chr11	77655009	77825722