JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSF1_chr11_77655009_77825722	0/0	t0041	6920	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0042	6917	1	0	0	0	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0043	6917	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0044	6917	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0045	6918	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0046	6917	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0047	6919	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0048	6917	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0049	6917	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0050	6918	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0051	6917	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0052	6918	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0053	6917	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0054	6918	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0055	6917	1	0	0	0	0	1	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0056	6917	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0057	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0058	6917	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0059	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0060	6922	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0061	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0062	6920	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0063	6919	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0064	6920	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0065	6915	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0066	6919	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0067	6917	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	t0068	6920	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSKR_chr17_28602963_28619185	1/0	t0001	2540	138	16	39	63	4	15	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/1	t0002	2541	57	15	9	23	0	9	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0003	2541	27	4	1	14	0	8	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0004	2540	24	7	6	7	1	3	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0005	2542	21	3	4	10	0	4	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0006	2542	10	8	0	1	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0007	2540	8	7	1	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0008	2540	6	0	0	6	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0009	2541	6	2	0	4	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0010	2542	6	4	2	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0011	2539	5	3	0	2	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0012	2543	5	3	0	2	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0013	2541	5	0	3	0	0	2	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0014	2540	4	0	0	4	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0015	2541	3	2	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0016	2540	3	0	1	0	1	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0017	2540	2	1	1	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0018	2540	2	0	0	2	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0019	2541	2	2	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0020	2541	2	0	0	2	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0021	2541	2	1	0	0	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0022	2541	2	1	1	0	0	0	copy fasta	RSKR	chr17	28602963	28619185