JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL8C_chrX_135027355_135038546	1/1	t0001	851	287	73	50	127	7	28	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	t0002	851	7	0	0	7	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	t0003	854	1	0	0	1	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	t0004	851	1	0	0	1	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	t0005	851	1	0	1	0	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	t0006	851	1	1	0	0	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL9_chrX_110353848_110461334	1/1	t0001	1250	100	1	15	66	3	13	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0002	1250	50	38	5	1	4	2	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0003	1250	4	3	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0004	1250	3	3	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0005	1250	2	2	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0006	1250	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0007	1250	1	0	0	0	0	1	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0008	1250	1	0	0	1	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0009	1250	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0010	1250	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	t0011	1250	1	0	0	1	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTN1_chr14_59590983_59875776	1/1	t0001	909	156	57	26	52	9	10	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0002	909	5	0	2	3	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0003	909	5	0	1	2	2	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0004	907	3	2	1	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0005	909	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0006	909	1	0	0	1	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	t0007	909	1	0	0	0	1	0	copy fasta	RTN1	chr14	59590983	59875776
RTN2_chr19_45480294_45502047	1/0	t0001	637	217	51	47	91	10	17	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/1	t0002	634	107	19	19	59	4	5	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	t0003	628	52	10	9	29	0	4	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	t0004	643	49	11	9	12	1	16	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	t0005	640	4	0	0	0	0	4	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	t0006	652	2	1	0	0	1	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	t0007	637	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN3_chr11_63676500_63764882	0/1	t0001	1818	101	34	28	18	6	14	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	1/0	t0002	1819	11	6	3	0	0	1	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0003	1816	10	8	0	2	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0004	1821	9	8	1	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0005	1818	7	0	2	0	1	4	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0006	1817	7	7	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0007	1817	6	5	0	0	1	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0008	1818	6	0	6	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0009	1819	3	3	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0010	1818	2	0	1	0	1	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0011	1817	2	0	0	0	0	2	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0012	1819	1	0	0	0	1	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0013	1818	1	0	1	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0014	1818	1	0	0	0	0	1	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0015	1818	1	1	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0016	1817	1	1	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	t0017	1818	1	1	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN4IP1_chr6_106565771_106634498	0/0	t0001	1703	133	25	20	68	7	13	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	1/1	t0002	1703	70	12	18	17	6	15	copy fasta	RTN4IP1	chr6	106565771	106634498