JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SAA4_chr11_18226355_18241802	0/1	t0001	238	360	67	76	158	14	44	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	1/0	t0002	238	48	21	6	18	0	2	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	t0003	238	4	4	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	t0004	238	3	3	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	t0005	238	2	2	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	t0006	238	1	1	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAAL1_chr11_18075292_18111082	1/1	t0001	149	283	96	44	98	12	31	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	t0002	149	1	0	0	0	0	1	copy fasta	SAAL1	chr11	18075292	18111082
SAC3D1_chr11_65036210_65049828	0/1	t0001	184	280	67	47	126	15	24	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	1/0	t0002	185	71	32	11	14	1	12	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	t0003	184	1	1	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SACM1L_chr3_45684396_45750409	1/0	t0001	1811	147	26	19	80	6	15	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0002	1812	127	35	42	32	6	12	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0003	1807	23	0	0	22	0	1	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0004	1812	19	16	3	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0005	1812	17	0	0	14	1	2	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/1	t0006	1812	4	0	1	0	2	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0007	1812	4	0	0	4	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0008	1811	3	0	3	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0009	1811	2	1	1	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0010	1811	2	0	0	2	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0011	1812	2	2	0	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0012	1812	1	0	0	0	1	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0013	1812	1	0	1	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0014	1811	1	1	0	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	t0015	1812	1	1	0	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACS_chr13_23323830_23438702	1/0	t0001	1896	178	44	39	74	8	12	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0002	1896	76	6	10	52	1	7	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0003	1896	37	4	14	10	2	7	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0004	1896	33	7	7	15	0	4	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0005	1896	8	8	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0006	1896	5	4	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0007	1896	5	3	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0008	1896	4	2	0	1	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/1	t0009	1896	4	0	2	0	1	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0010	1896	3	3	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0011	1891	3	0	3	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0012	1896	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0013	1896	2	0	0	0	0	2	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0014	1896	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0015	1896	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0016	1896	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0017	1896	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0018	1896	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0019	1896	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0020	1896	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0021	1896	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0022	1896	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0023	1896	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0024	1896	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702