Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACO1_chr9_32379643_32459769	0/0	t0028	4827	3	3	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0029	4780	3	0	1	0	2	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	1/0	t0030	4774	3	2	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0031	4776	2	2	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0032	4827	2	1	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0033	4781	2	0	2	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0034	4780	2	2	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0035	4774	2	0	2	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0036	4774	2	1	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0037	4776	2	0	0	2	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0038	4755	2	2	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0039	4778	2	0	0	2	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0040	4776	2	0	0	2	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0041	4776	2	0	0	2	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0042	4775	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0043	4775	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0044	4755	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0045	4775	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0046	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0047	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0048	4777	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0049	4776	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0050	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0051	4775	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0052	4776	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0053	4775	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0054	4776	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0055	4776	1	0	0	0	1	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0056	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0057	4777	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0058	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0059	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0060	4777	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0061	4775	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0062	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0063	4777	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0064	4776	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0065	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0066	4779	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0067	4774	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0068	4746	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0069	4755	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0070	4776	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0071	4777	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0072	4827	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0073	4827	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0074	4776	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0075	4773	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0076	4780	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0077	4781	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769