JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCGN_chr6_25647215_25706783	0/0	t0009	638	2	2	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	1/0	t0010	638	2	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0011	637	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0012	638	1	0	0	1	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0013	639	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0014	639	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0015	639	1	0	0	1	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0016	638	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0017	639	1	0	1	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	t0018	639	1	0	0	1	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCHIP1_chr3_159268244_159902359	0/0	t0001	1163	96	61	18	9	2	6	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	t0002	1163	1	1	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	t0003	1163	1	1	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	t0004	1163	1	0	0	1	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	t0005	1163	1	1	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCIMP_chr17_5203920_5239860	0/0	t0001	1987	183	44	18	97	6	18	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0002	1987	58	4	29	10	3	12	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/1	t0003	1987	37	10	10	10	2	4	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0004	1987	32	1	4	21	1	5	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0005	1987	30	4	4	20	0	2	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0006	1987	14	11	3	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0007	1987	4	3	1	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0008	1979	4	4	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0009	1987	3	3	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0010	1987	3	3	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0011	1987	2	0	2	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0012	1987	2	2	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	1/0	t0013	1987	2	1	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0014	1987	2	0	1	0	0	1	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0015	1987	2	0	0	2	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0016	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0017	1979	1	1	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0018	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0019	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0020	1987	1	1	0	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0021	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0022	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	t0023	1987	1	0	0	1	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIN_chr7_12565720_12665182	1/0	t0001	7535	12	0	3	6	1	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0002	7522	10	0	1	8	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0003	7511	8	8	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0004	7522	7	0	7	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0005	7535	5	0	0	5	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0006	7535	5	0	4	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0007	7519	4	4	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0008	7534	4	0	0	4	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0009	7521	3	0	0	3	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0010	7523	3	0	3	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0011	7521	3	0	0	1	2	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/1	t0012	7522	3	0	1	1	0	0	copy fasta	SCIN	chr7	12565720	12665182