JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	t0063	7534	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0064	7546	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0065	7542	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0066	7532	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0067	7520	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0068	7523	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0069	7522	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0070	7554	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0071	7554	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0072	7535	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0073	7533	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0074	7517	1	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0075	7518	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0076	7517	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0077	7563	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0078	7521	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0079	7524	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0080	7522	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0081	7524	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0082	7522	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0083	7537	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0084	7535	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0085	7520	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0086	7556	1	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0087	7520	1	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0088	7532	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0089	7533	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0090	7532	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0091	7511	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0092	7515	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0093	7537	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0094	7534	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0095	7536	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0096	7535	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0097	7536	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0098	7536	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0099	7523	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0100	7535	1	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0101	7546	1	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0102	7535	1	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0103	7548	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0104	7537	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0105	7548	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0106	7550	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0107	7537	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0108	7536	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0109	7541	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0110	7553	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0111	7542	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0112	7534	1	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182