JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	t0113	7535	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0114	7538	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0115	7542	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0116	7533	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0117	7534	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0118	7533	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0119	7534	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0120	7534	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0121	7532	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0122	7534	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0123	7532	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0124	7521	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0125	7533	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0126	7533	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0127	7536	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0128	7507	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0129	7531	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0130	7532	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0131	7537	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0132	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0133	7533	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0134	7552	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0135	7548	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0136	7562	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0137	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0138	7548	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0139	7550	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0140	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0141	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0142	7550	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0143	7539	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0144	7544	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0145	7544	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0146	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0147	7536	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0148	7534	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0149	7534	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0150	7536	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0151	7535	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0152	7534	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0153	7534	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0154	7535	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0155	7533	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0156	7517	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0157	7533	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0158	7552	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0159	7553	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0160	7534	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0161	7535	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0162	7519	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182