JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	t0163	7548	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0164	7548	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0165	7551	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0166	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0167	7535	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0168	7536	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0169	7536	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0170	7519	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0171	7537	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0172	7535	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0173	7534	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0174	7535	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0175	7539	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0176	7536	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0177	7523	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0178	7532	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0179	7532	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0180	7525	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0181	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0182	7548	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0183	7544	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0184	7544	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0185	7535	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0186	7524	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0187	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0188	7537	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0189	7520	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0190	7514	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0191	7536	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0192	7523	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0193	7518	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0194	7520	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0195	7544	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0196	7511	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0197	7538	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0198	7534	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0199	7541	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0200	7545	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0201	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0202	7548	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0203	7543	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0204	7545	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0205	7546	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0206	7551	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0207	7553	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0208	7540	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0209	7545	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0210	7540	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0211	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0212	7533	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182