JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	t0213	7551	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0214	7536	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0215	7522	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0216	7545	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0217	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0218	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0219	7550	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0220	7554	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0221	7555	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0222	7536	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0223	7535	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0224	7530	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0225	7522	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0226	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0227	7548	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0228	7545	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0229	7520	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0230	7535	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0231	7537	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0232	7554	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0233	7562	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0234	7554	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0235	7557	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0236	7559	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0237	7553	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0238	7554	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0239	7555	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0240	7555	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0241	7548	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0242	7546	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0243	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0244	7535	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0245	7535	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0246	7553	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0247	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0248	7538	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0249	7545	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0250	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0251	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0252	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0253	7549	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0254	7547	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0255	7537	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0256	7537	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0257	7535	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0258	7560	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0259	7546	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0260	7533	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0261	7531	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0262	7535	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182