JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	t0263	7538	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0264	7533	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0265	7544	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0266	7534	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0267	7552	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0268	7534	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0269	7548	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0270	7548	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0271	7542	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0272	7542	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0273	7536	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	t0274	7539	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCLT1_chr4_128878993_129098539	1/1	t0001	921	263	48	51	130	8	24	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0002	920	9	0	6	0	2	1	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0003	921	4	4	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0004	921	4	3	0	1	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0005	921	3	0	1	0	1	1	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0006	921	1	0	0	0	1	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0007	921	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0008	921	1	0	0	1	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0009	921	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	t0010	921	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLY_chr2_238056001_238104413	0/0	t0001	1180	29	0	7	21	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0002	1278	21	3	7	2	3	6	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0003	1211	17	0	0	17	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0004	1099	14	5	1	6	1	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0005	1197	9	0	0	9	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0006	1197	9	0	3	5	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0007	1323	9	9	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0008	1096	8	1	4	2	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0009	1225	7	5	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0010	1085	6	1	1	4	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0011	1169	6	0	0	6	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0012	1183	6	0	0	5	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0013	1197	5	5	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0014	1096	5	0	2	2	1	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0015	1113	5	0	1	4	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0016	1183	4	0	0	4	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0017	1155	4	0	0	4	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0018	1141	4	0	0	3	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0019	1155	4	0	0	2	0	2	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0020	1180	4	4	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0021	1096	3	0	0	1	1	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0022	1225	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0023	1141	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0024	1141	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0025	1155	3	1	0	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0026	1197	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0027	1197	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	t0028	1211	3	0	0	3	0	0	copy fasta	SCLY	chr2	238056001	238104413