JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN2B_chr11_118157806_118181639	0/0	t0032	4290	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0033	4395	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0034	4285	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0035	4290	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0036	4290	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0037	4290	1	0	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0038	4289	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0039	4290	1	0	0	0	1	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0040	4290	1	0	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0041	4290	1	0	1	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0042	4289	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0043	4289	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0044	4288	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0045	4287	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0046	4287	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0047	4288	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0048	4287	1	0	0	0	0	1	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0049	4289	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0050	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0051	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0052	4286	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0053	4288	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0054	4325	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0055	4287	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0056	4286	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0057	4275	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0058	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0059	4287	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0060	4286	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0061	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0062	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0063	4285	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0064	4284	1	0	0	1	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	t0065	4287	1	1	0	0	0	0	copy fasta	SCN2B	chr11	118157806	118181639
SCN3A_chr2_165082526_165209050	1/0	t0001	3100	209	29	41	105	7	26	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0002	3101	38	24	4	5	1	4	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0003	3099	28	4	4	14	2	4	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0004	3102	12	8	2	0	1	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0005	3101	6	5	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0006	3101	3	3	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0007	3102	3	2	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0008	3100	2	2	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0009	3102	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0010	3102	1	0	0	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0011	3101	1	0	0	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0012	3101	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0013	3100	1	0	0	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0014	3100	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0015	3100	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0016	3100	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050