JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN3A_chr2_165082526_165209050	0/0	t0017	3100	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0018	3100	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0019	3100	1	0	0	0	1	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/1	t0020	3100	1	0	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	t0021	3099	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3B_chr11_123624188_123659624	1/1	t0001	5036	175	17	40	78	9	29	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0002	5036	35	2	3	29	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0003	5036	26	0	18	5	1	2	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0004	5036	21	11	4	0	2	4	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0005	5036	20	3	0	17	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0006	5036	17	0	4	11	0	2	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0007	5036	13	2	0	5	1	5	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0008	5036	11	0	2	8	1	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0009	5036	8	7	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0010	5036	6	6	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0011	5036	6	0	0	6	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0012	5032	5	5	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0013	5036	5	5	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0014	5032	5	3	1	0	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0015	5036	4	0	0	4	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0016	5036	4	0	0	2	2	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0017	5036	3	0	0	3	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0018	5036	3	1	0	1	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0019	5036	3	0	0	3	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0020	5036	3	0	0	3	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0021	5036	3	0	0	3	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0022	5036	3	3	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0023	5036	3	3	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0024	5036	3	3	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0025	5036	3	0	0	3	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0026	5036	3	3	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0027	5036	2	2	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0028	5036	2	1	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0029	5036	2	0	0	1	0	1	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0030	5036	2	2	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0031	5036	2	0	0	2	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0032	5036	2	0	0	2	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0033	5037	2	2	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0034	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0035	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0036	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0037	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0038	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0039	5070	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0040	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0041	5036	1	1	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0042	5036	1	0	1	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0043	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0044	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	t0045	5036	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624