JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN4B_chr11_118128377_118157823	0/0	t0037	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0038	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0039	3800	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0040	3801	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0041	3801	1	0	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0042	3801	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0043	3801	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0044	3801	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0045	3801	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0046	3801	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0047	3812	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0048	3813	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0049	3801	1	1	0	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0050	3801	1	0	0	0	0	1	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	t0051	3802	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN5A_chr3_38543062_38654687	0/1	t0001	2494	140	31	16	65	6	21	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0002	2495	62	27	12	22	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0003	2495	50	6	5	30	1	8	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0004	2494	47	11	10	20	0	6	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0005	2495	6	0	0	6	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0006	2494	4	0	0	4	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0007	2495	4	3	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0008	2495	3	3	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0009	2495	2	0	0	2	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0010	2494	2	0	0	2	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	1/0	t0011	2469	2	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0012	2494	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0013	2494	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0014	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0015	2494	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0016	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0017	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0018	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0019	2495	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0020	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0021	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0022	2494	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0023	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0024	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0025	2495	1	0	0	0	1	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0026	2495	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0027	2495	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	t0028	2495	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN7A_chr2_166398573_166499249	1/1	t0001	2417	198	32	45	76	9	34	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0002	2417	49	14	9	24	0	2	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0003	2418	26	4	2	16	0	4	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0004	2416	24	15	1	7	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0005	2415	20	0	0	20	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0006	2418	11	2	3	1	0	5	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0007	2416	9	0	0	8	0	1	copy fasta	SCN7A	chr2	166398573	166499249