JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCN7A_chr2_166398573_166499249	0/0	t0008	2417	8	7	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0009	2415	6	3	1	0	2	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0010	2419	5	1	3	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0011	2417	3	0	2	0	1	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0012	2417	3	0	0	3	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0013	2416	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0014	2416	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0015	2417	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0016	2418	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0017	2418	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0018	2415	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0019	2417	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0020	2418	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0021	2417	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0022	2416	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0023	2417	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0024	2417	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0025	2417	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0026	2417	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0027	2417	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0028	2418	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0029	2419	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0030	2417	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0031	2418	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0032	2416	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0033	2418	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0034	2417	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0035	2418	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	t0036	2419	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN8A_chr12_51586233_51817864	0/1	t0001	5617	59	21	13	15	4	5	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	1/0	t0002	5617	35	12	10	1	1	10	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0003	5617	25	0	3	14	3	5	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0004	5617	18	11	1	2	0	4	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0005	5619	9	9	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0006	5621	9	9	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0007	5617	8	0	3	5	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0008	5619	6	6	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0009	5615	4	4	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0010	5610	4	3	1	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0011	5617	3	0	0	0	0	3	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0012	5617	2	1	0	0	0	1	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0013	5617	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0014	5615	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0015	5617	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0016	5617	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0017	5619	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0018	5619	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0019	5644	1	0	1	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0020	5617	1	0	0	0	0	1	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	t0021	5617	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864