JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCUBE3_chr6_35208956_35258079	0/0	t0047	4837	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0048	4832	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0049	4832	1	0	1	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0050	4832	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0051	4841	1	1	0	0	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCUBE3_chr6_35208956_35258079	0/0	t0052	4821	1	0	0	1	0	0	copy fasta	SCUBE3	chr6	35208956	35258079
SCX_chr8_144261453_144273481	1/1	t0001	501	419	87	81	188	18	43	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0002	501	7	7	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0003	502	7	2	0	4	0	1	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0004	502	1	0	1	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0005	501	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0006	501	1	0	0	1	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0007	501	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0008	501	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0009	501	1	1	0	0	0	0	copy fasta	SCX	chr8	144261453	144273481
SCX_chr8_144261453_144273481	0/0	t0010	501	1	0	0	1	0	0	copy fasta	SCX	chr8	144261453	144273481
SCYL1_chr11_65520083_65543704	1/1	t0001	210	275	83	45	105	10	30	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	t0002	210	1	0	0	1	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	t0003	210	1	1	0	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	t0004	210	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL2_chr12_100262177_100346715	1/1	t0001	3188	144	30	30	58	8	16	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0002	3188	28	9	5	4	6	4	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0003	3183	9	9	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0004	3188	9	9	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0005	3188	7	0	0	7	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0006	3188	5	5	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0007	3188	4	4	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0008	3188	2	2	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0009	3188	2	2	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0010	3188	2	2	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0011	3183	1	0	0	0	0	1	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0012	3188	1	0	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0013	3188	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0014	3188	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0015	3188	1	0	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0016	3188	1	0	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0017	3188	1	0	0	0	0	1	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	t0018	3188	1	0	0	1	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL3_chr1_169844631_169898896	0/0	t0001	4228	42	9	3	17	5	8	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0002	4244	36	3	2	28	1	2	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0003	4239	30	0	3	27	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0004	4245	18	0	0	16	0	2	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0005	4227	16	6	0	6	0	4	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0006	4240	14	1	2	11	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0007	4178	12	0	4	5	0	3	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	1/0	t0008	4242	11	0	5	0	2	3	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0009	4185	11	2	6	0	0	3	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0010	4186	10	3	4	0	3	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/1	t0011	4221	9	0	7	0	1	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0012	4229	8	1	1	6	0	0	copy fasta	SCYL3	chr1	169844631	169898896