JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCYL3_chr1_169844631_169898896	0/0	t0063	4245	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0064	4244	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0065	4258	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0066	4257	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0067	4247	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0068	4246	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0069	4250	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0070	4247	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0071	4243	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0072	4242	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0073	4241	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0074	4239	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0075	4253	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0076	4249	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0077	4241	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0078	4243	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0079	4239	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0080	4238	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0081	4274	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0082	4250	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0083	4232	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0084	4229	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0085	4288	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0086	4285	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0087	4283	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0088	4281	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0089	4276	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0090	4272	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0091	4268	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0092	4270	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0093	4269	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0094	4266	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0095	4262	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0096	4259	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0097	4264	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0098	4266	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0099	4256	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0100	4190	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0101	4262	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0102	4189	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0103	4185	1	0	0	0	1	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0104	4182	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0105	4253	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0106	4258	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0107	4252	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0108	4245	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0109	4232	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0110	4261	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0111	4257	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0112	4249	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896