JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SCYL3_chr1_169844631_169898896	0/0	t0113	4243	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0114	4239	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0115	4238	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0116	4231	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0117	4274	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0118	4267	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0119	4263	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0120	4257	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0121	4242	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0122	4241	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0123	4234	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0124	4263	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0125	4261	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0126	4246	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0127	4228	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0128	4243	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0129	4246	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0130	4248	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0131	4239	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0132	4239	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	t0133	4240	1	0	0	1	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SDAD1_chr4_75944915_75995945	0/0	t0001	941	99	22	22	40	3	12	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	1/0	t0002	940	76	28	10	27	2	8	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/1	t0003	941	71	2	12	49	2	5	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0004	939	49	22	9	12	3	3	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0005	940	38	1	3	29	1	4	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0006	942	15	5	0	7	0	3	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0007	939	13	2	3	3	1	4	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0008	942	8	1	2	5	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0009	941	2	1	1	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0010	941	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0011	941	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0012	941	1	0	0	0	0	1	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0013	940	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	t0014	941	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDC1_chr2_20195797_20230130	0/0	t0001	2232	139	19	25	74	6	15	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/1	t0002	2233	113	16	18	50	7	21	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	1/0	t0003	2233	82	43	14	16	2	6	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0004	2232	15	1	3	8	0	3	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0005	2231	11	1	3	6	0	1	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0006	2233	7	0	0	7	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0007	2232	3	0	1	2	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0008	2233	3	3	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0009	2232	3	0	2	0	0	1	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0010	2232	2	0	0	2	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0011	2233	2	2	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0012	2233	2	0	0	2	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0013	2232	2	0	0	1	0	1	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0014	2233	2	0	0	2	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	t0015	2232	2	0	0	2	0	0	copy fasta	SDC1	chr2	20195797	20230130