Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACO1_chr9_32379643_32459769	0/0	t0078	4780	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0079	4779	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0080	4761	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0081	4778	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0082	4779	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0083	4778	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0084	4777	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0085	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0086	4777	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0087	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0088	4775	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0089	4775	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0090	4776	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0091	4775	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0092	4776	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0093	4775	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0094	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0095	4777	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0096	4776	1	0	1	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0097	4773	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0098	4777	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0099	4776	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0100	4773	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0101	4774	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0102	4775	1	0	0	0	1	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0103	4774	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0104	4774	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0105	4777	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0106	4775	1	0	0	1	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0107	4775	1	0	0	0	0	1	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0108	4778	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0109	4776	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0110	4776	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0111	4778	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0112	4755	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO1_chr9_32379643_32459769	0/0	t0113	4754	1	1	0	0	0	0	copy fasta	ACO1	chr9	32379643	32459769
ACO2_chr22_41464117_41533974	1/1	t0001	392	327	85	58	138	12	32	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	t0002	392	5	5	0	0	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	t0003	392	1	0	0	1	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACO2_chr22_41464117_41533974	0/0	t0004	392	1	0	0	1	0	0	copy fasta	ACO2	chr22	41464117	41533974
ACOD1_chr13_76943511_76963638	1/1	t0001	702	433	91	82	202	16	40	copy fasta	ACOD1	chr13	76943511	76963638
ACOD1_chr13_76943511_76963638	0/0	t0002	702	1	1	0	0	0	0	copy fasta	ACOD1	chr13	76943511	76963638
ACOT11_chr1_54543228_54615329	0/0	t0001	1300	93	6	31	33	5	18	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0002	1300	85	5	23	45	4	8	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	1/1	t0003	1300	61	41	6	6	3	3	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0004	1300	60	2	8	43	0	7	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0005	1300	41	6	6	27	0	2	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0006	1300	12	11	1	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0007	1300	11	11	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0008	1300	11	0	0	10	0	1	copy fasta	ACOT11	chr1	54543228	54615329