JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERBP1_chr1_67402810_67435402	0/0	t0066	5501	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0067	5500	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0068	5509	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0069	5504	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0070	5502	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0071	5498	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0072	5499	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0073	5499	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0074	5500	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0075	5503	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0076	5501	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0077	5498	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0078	5499	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0079	5502	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0080	5511	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0081	5474	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0082	5496	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0083	5480	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0084	5494	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0085	5499	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0086	5500	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0087	5506	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0088	5509	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0089	5516	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0090	5520	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0091	5601	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0092	5604	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0093	5502	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0094	5504	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0095	5502	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0096	5506	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0097	5508	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0098	5500	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0099	5502	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0100	5503	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0101	5500	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0102	5498	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0103	5498	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERF1A_chr5_70895669_70913115	0/0	t0001	511	4	0	0	2	0	2	copy fasta	SERF1A	chr5	70895669	70913115
SERF1B_chr5_70020251_70048113	0/0	t0001	1575	150	35	18	84	5	8	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0002	1575	27	0	8	13	3	3	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0003	1575	13	0	5	4	1	3	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0004	745	9	8	1	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0005	1574	4	1	2	0	1	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0006	745	4	4	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0007	1575	2	0	0	2	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0008	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0009	1575	1	0	0	0	0	1	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0010	1575	1	0	0	1	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0011	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113