JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHC4_chr15_48818741_48968919	0/0	t0002	3136	83	10	14	46	5	8	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0003	3135	44	6	7	31	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0004	3137	41	4	7	20	1	9	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0005	3135	22	8	5	0	4	5	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0006	3136	6	6	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0007	3136	4	0	0	4	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0008	3136	3	3	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0009	3136	3	3	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0010	3136	3	3	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0011	3136	2	0	0	0	0	2	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	1/0	t0012	3135	2	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0013	3135	2	0	0	2	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0014	3136	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0015	3136	1	0	0	0	0	1	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0016	3136	1	0	0	0	0	1	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0017	3136	1	0	0	0	0	1	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0018	3137	1	0	0	0	0	1	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0019	3136	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0020	3135	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0021	3136	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0022	3136	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0023	3136	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0024	3135	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0025	3135	1	0	0	0	0	1	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0026	3136	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	t0027	3137	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHCBP1L_chr1_182894865_182958166	1/1	t0001	152	302	88	64	114	10	24	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1_chr16_46573591_46626379	0/1	t0001	3159	145	41	40	33	6	24	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0002	3158	9	8	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	1/0	t0003	3159	6	4	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0004	3159	4	0	0	4	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0005	3160	3	3	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0006	3160	2	2	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0007	3159	2	2	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0008	3160	2	2	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0009	3156	2	2	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0010	3159	2	2	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0011	3159	2	0	2	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0012	3159	1	1	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0013	3159	1	1	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0014	3159	1	1	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0015	3159	1	1	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	t0016	3159	1	0	0	1	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHD_chr19_4274266_4295722	1/1	t0001	888	189	29	34	83	13	28	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0002	888	126	7	32	68	3	16	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0003	888	49	27	8	8	2	4	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0004	888	47	11	6	29	0	1	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0005	889	13	13	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0006	888	5	3	2	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0007	888	5	0	0	5	0	0	copy fasta	SHD	chr19	4274266	4295722