JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHOC2_chr10_110914604_111018665	0/0	t0007	2137	3	0	1	1	0	1	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0008	2136	3	2	1	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0009	2137	2	0	0	0	0	2	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0010	2136	1	0	1	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0011	2136	1	0	0	0	0	1	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0012	2136	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0013	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0014	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0015	2136	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0016	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0017	2136	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0018	2137	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0019	2136	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0020	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0021	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0022	2136	1	0	0	0	0	1	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0023	2136	1	0	0	0	0	1	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0024	2136	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0025	2136	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOX2_chr3_158090905_158111420	0/0	t0001	2526	27	2	5	12	4	4	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0002	2528	23	1	3	17	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0003	2526	23	2	6	14	1	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0004	2524	16	1	3	10	1	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0005	2524	12	1	3	6	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0006	2528	12	1	1	8	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0007	2523	11	3	5	0	2	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0008	2530	11	0	2	6	1	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0009	2506	10	1	0	6	0	3	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0010	2532	9	0	2	5	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0011	2522	9	0	0	9	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0012	2522	9	0	2	6	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0013	2532	6	0	2	3	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0014	2525	5	1	2	0	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0015	2530	5	1	0	3	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0016	2508	5	1	0	4	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0017	2522	5	0	0	5	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0018	2520	4	0	2	2	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0019	2494	4	0	1	0	1	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0020	2517	4	4	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0021	2513	4	3	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0022	2508	4	3	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0023	2525	4	2	0	0	1	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0024	2521	4	2	2	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0025	2524	4	2	0	2	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0026	2520	4	0	2	2	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0027	2527	3	0	1	0	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	1/0	t0028	2519	3	0	0	0	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0029	2517	3	0	2	0	1	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0030	2523	3	3	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0031	2519	3	3	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420