JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHOX2_chr3_158090905_158111420	0/0	t0082	2534	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0083	2525	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0084	2526	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0085	2512	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0086	2511	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0087	2497	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0088	2533	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0089	2529	1	0	0	0	1	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0090	2519	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0091	2509	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0092	2505	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0093	2540	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0094	2536	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0095	2508	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0096	2532	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0097	2572	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0098	2556	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0099	2554	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0100	2554	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0101	2528	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0102	2552	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0103	2538	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0104	2533	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0105	2529	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0106	2519	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0107	2517	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0108	2510	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0109	2507	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0110	2506	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0111	2505	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0112	2528	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0113	2526	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0114	2521	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0115	2516	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0116	2532	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0117	2527	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0118	2521	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0119	2521	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0120	2534	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0121	2530	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0122	2528	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0123	2526	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0124	2524	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0125	2528	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0126	2524	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0127	2520	1	0	1	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	t0128	2527	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX_chrX_625791_656584	0/0	t0001	6984	6	0	4	0	2	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0002	6403	3	0	0	2	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0003	6816	2	0	0	0	2	0	copy fasta	SHOX	chrX	625791	656584