JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIGLEC15_chr18_45820675_45849094	0/0	t0023	1962	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0024	1960	1	0	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0025	1964	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0026	1964	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0027	1962	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	t0028	1962	1	0	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC1_chr20_3681970_3717600	0/1	t0001	1832	139	34	29	50	3	22	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	1/0	t0002	1831	96	9	21	54	4	7	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0003	1831	73	10	10	44	5	4	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0004	1832	33	15	1	11	1	5	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0005	1831	30	0	0	30	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0006	1831	23	10	4	1	4	4	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0007	1832	5	5	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0008	1831	3	0	2	0	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0009	1832	3	0	3	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0010	1832	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0011	1832	2	0	0	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0012	1831	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0013	1831	2	0	0	1	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0014	1832	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0015	1831	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0016	1832	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0017	1831	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0018	1832	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0019	1832	1	0	0	0	1	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0020	1831	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0021	1832	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0022	1831	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0023	1831	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0024	1831	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0025	1831	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0026	1832	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	t0027	1832	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC5_chr19_51605960_51635401	0/1	t0001	1357	235	49	53	103	6	23	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0002	1357	41	13	4	17	4	3	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0003	1291	35	5	0	20	1	9	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0004	1357	27	4	8	6	1	8	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0005	1357	25	0	0	25	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0006	1357	14	13	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0007	1357	8	0	3	5	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	1/0	t0008	1338	4	0	3	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0009	1291	4	0	0	2	1	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0010	1357	2	0	0	0	2	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0011	1357	2	0	2	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0012	1357	2	2	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0013	1357	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0014	1291	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0015	1357	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0016	1357	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	t0017	1357	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401