JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIRPB1_chr20_1556385_1625009	0/0	t0036	4179	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB2_chr20_1469578_1496420	1/0	t0001	1651	274	26	49	148	11	39	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0002	1650	27	21	6	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0003	1650	24	19	3	0	0	2	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0004	1650	12	4	6	0	1	1	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/1	t0005	1650	6	0	2	3	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0006	1651	5	5	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0007	1650	3	3	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0008	1650	3	3	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0009	1651	2	0	0	2	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0010	1650	2	2	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0011	1650	2	1	1	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0012	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0013	1651	1	0	0	0	0	1	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0014	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0015	1650	1	0	1	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0016	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0017	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0018	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0019	1650	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0020	1651	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0021	1651	1	0	0	0	0	1	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0022	1651	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	t0023	1651	1	0	0	1	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPD_chr20_1529251_1562705	1/1	t0001	227	389	90	70	171	12	44	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	t0002	227	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPG_chr20_1624152_1662779	0/0	t0001	553	146	16	29	69	7	25	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	1/1	t0002	553	93	26	18	34	1	12	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0003	553	83	0	22	49	3	9	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0004	553	38	26	6	0	5	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0005	553	8	7	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0006	553	5	0	0	5	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0007	553	5	5	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0008	553	5	5	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0009	553	3	0	0	3	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0010	553	3	3	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0011	553	2	2	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0012	553	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0013	553	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0014	553	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0015	553	1	0	0	0	0	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	t0016	553	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRT1_chr10_67879656_67923390	0/0	t0001	1861	83	4	25	31	7	16	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0002	1864	81	0	8	66	0	7	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0003	1864	72	22	12	20	5	13	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/1	t0004	1864	66	3	4	55	0	3	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0005	1863	21	18	3	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0006	1863	17	10	2	3	1	1	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0007	1865	11	3	6	0	1	1	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0008	1860	7	2	1	2	0	2	copy fasta	SIRT1	chr10	67879656	67923390