JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIRT1_chr10_67879656_67923390	0/0	t0009	1864	6	5	1	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	1/0	t0010	1864	6	5	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0011	1864	6	6	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0012	1861	5	0	2	1	2	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0013	1864	3	3	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0014	1863	3	0	0	3	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0015	1864	3	0	3	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0016	1863	3	3	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0017	1864	2	1	1	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0018	1864	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0019	1864	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0020	1864	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0021	1864	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0022	1864	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0023	1860	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0024	1861	1	0	1	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0025	1861	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0026	1864	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0027	1864	1	0	0	0	0	1	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0028	1863	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0029	1862	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0030	1861	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0031	1864	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	t0032	1864	1	0	1	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT2_chr19_38873560_38904618	0/0	t0001	693	192	32	42	90	3	25	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	1/1	t0002	693	180	48	31	71	9	19	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0003	693	32	0	0	32	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0004	693	17	11	1	3	0	2	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0005	693	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0006	693	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0007	693	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0008	693	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	t0009	693	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT3_chr11_210030_241342	0/1	t0001	1683	184	50	49	58	8	18	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0002	1683	78	5	17	55	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	1/0	t0003	1683	70	18	8	26	3	14	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0004	1683	44	6	7	24	0	7	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0005	1683	8	8	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0006	1683	5	0	0	5	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0007	1683	4	0	1	0	1	2	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0008	1683	4	3	1	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0009	1683	3	3	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0010	1683	3	3	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0011	1683	2	0	0	2	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0012	1683	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0013	1683	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0014	1683	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0015	1683	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0016	1683	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	t0017	1683	1	0	1	0	0	0	copy fasta	SIRT3	chr11	210030	241342