JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIX6_chr14_60504146_60517850	0/0	t0008	1826	2	1	1	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0009	1830	1	0	0	0	0	1	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0010	1830	1	0	0	1	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0011	1830	1	0	0	0	0	1	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0012	1831	1	1	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0013	1830	1	0	1	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0014	1831	1	1	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0015	1831	1	1	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0016	1830	1	0	0	1	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	t0017	1852	1	0	0	1	0	0	copy fasta	SIX6	chr14	60504146	60517850
SI_chr3_164973898_165083496	1/1	t0001	529	172	32	47	66	7	18	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0002	528	45	7	7	22	3	6	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0003	529	23	23	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0004	529	20	19	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0005	529	2	0	2	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0006	528	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0007	528	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0008	529	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	t0009	529	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SKA1_chr18_50370046_50399168	0/0	t0001	2081	150	28	23	78	6	15	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0002	2081	81	13	14	35	6	13	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/1	t0003	2082	45	4	17	8	3	12	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0004	2084	28	0	0	28	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0005	2082	12	0	0	12	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0006	2086	12	11	1	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0007	2082	9	9	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0008	2081	4	0	0	4	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0009	2084	4	4	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0010	2076	3	3	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0011	2081	3	3	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0012	2082	3	0	0	0	3	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0013	2082	3	3	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0014	2079	3	3	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0015	2080	3	0	0	3	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0016	2082	3	0	1	1	0	1	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0017	2080	2	2	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0018	2081	2	0	0	2	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0019	2082	2	2	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0020	2086	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0021	2081	1	0	0	1	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0022	2081	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0023	2081	1	0	0	0	0	1	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0024	2082	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0025	2082	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0026	2086	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0027	2081	1	0	0	1	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0028	2083	1	0	0	1	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0029	2081	1	0	0	0	0	1	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0030	2081	1	0	0	1	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	t0031	2081	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168