JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC11A1_chr2_218377273_218401894	0/0	t0022	1957	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0023	1961	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	1/0	t0024	1956	1	0	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0025	1957	1	0	0	0	1	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0026	1961	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0027	1961	1	0	0	0	1	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0028	1961	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0029	1961	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0030	1957	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0031	1957	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0032	1956	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0033	1961	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	t0034	1961	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A2_chr12_50980992_51031384	0/0	t0001	2447	151	29	36	66	7	13	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/1	t0002	2447	103	9	13	61	3	16	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0003	2447	40	3	11	18	3	5	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	1/0	t0004	2447	18	11	0	1	1	4	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0005	2447	18	17	1	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0006	2447	17	0	10	7	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0007	2447	4	4	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0008	2447	2	2	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0009	2447	2	2	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0010	2447	2	0	0	2	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0011	2447	2	0	0	2	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0012	2447	2	0	2	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0013	2447	2	2	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0014	2447	2	2	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0015	2447	1	0	0	0	0	1	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0016	2447	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0017	2447	1	0	0	1	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0018	2447	1	0	1	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	t0019	2447	1	0	0	0	0	1	copy fasta	SLC11A2	chr12	50980992	51031384
SLC12A1_chr15_48201302_48309078	0/1	t0001	1409	130	29	25	67	0	8	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	1/0	t0002	1409	76	15	10	46	0	4	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0003	1409	19	4	1	13	0	1	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0004	1409	11	5	1	4	0	1	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0005	1409	8	8	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0006	1409	6	6	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0007	1409	3	3	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0008	1409	2	0	0	2	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0009	1409	2	2	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0010	1409	2	2	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0011	1409	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0012	1409	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0013	1409	1	0	1	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0014	1409	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0015	1409	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0016	1409	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	t0017	1409	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A2_chr5_128078766_128194677	0/0	t0001	3236	81	13	17	42	5	4	copy fasta	SLC12A2	chr5	128078766	128194677