JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A2_chr5_128078766_128194677	0/0	t0002	3233	71	10	13	32	4	12	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	1/1	t0003	3236	66	2	10	40	2	10	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0004	3234	12	12	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0005	3236	7	5	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0006	3234	7	3	0	4	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0007	3233	7	0	0	7	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0008	3237	6	0	1	4	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0009	3234	5	5	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0010	3237	5	3	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0011	3237	4	3	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0012	3235	4	0	0	4	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0013	3234	4	1	1	1	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0014	3238	3	2	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0015	3235	3	2	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0016	3238	3	3	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0017	3237	3	3	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0018	3233	3	0	1	2	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0019	3233	3	0	1	0	0	2	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0020	3232	3	3	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0021	3237	3	0	0	3	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0022	3233	2	0	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0023	3236	2	2	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0024	3235	2	0	1	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0025	3237	2	1	0	0	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0026	3232	2	1	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0027	3235	2	2	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0028	3234	2	0	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0029	3234	2	0	0	2	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0030	3236	2	2	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0031	3237	2	0	0	1	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0032	3236	2	0	0	2	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0033	3238	2	0	1	0	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0034	3236	2	0	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0035	3236	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0036	3238	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0037	3234	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0038	3236	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0039	3235	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0040	3236	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0041	3236	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0042	3237	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0043	3238	1	0	0	0	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0044	3232	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0045	3235	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0046	3235	1	0	0	0	1	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0047	3235	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0048	3235	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0049	3234	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0050	3233	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0051	3232	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677