JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC12A2_chr5_128078766_128194677	0/0	t0052	3233	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0053	3236	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0054	3238	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0055	3236	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0056	3235	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0057	3238	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0058	3238	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	t0059	3236	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A3_chr16_56860207_56920850	1/1	t0001	2475	111	3	20	69	4	13	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0002	2475	86	29	12	33	6	6	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0003	2474	66	21	16	13	4	12	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0004	2475	65	1	16	40	2	6	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0005	2475	51	10	9	25	2	5	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0006	2474	7	7	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0007	2475	5	3	0	1	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0008	2475	4	0	0	4	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0009	2474	4	4	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0010	2475	4	4	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0011	2475	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0012	2475	2	0	1	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0013	2475	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0014	2475	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0015	2475	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0016	2474	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0017	2475	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0018	2475	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0019	2475	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0020	2475	1	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0021	2475	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0022	2474	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0023	2474	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0024	2475	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	t0025	2475	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A4_chr16_67938474_67973637	1/1	t0001	1451	143	28	33	46	7	27	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0002	1451	97	44	16	25	2	10	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0003	1451	10	9	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0004	1439	6	0	0	6	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0005	1439	5	5	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0006	1451	3	3	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0007	1451	2	0	0	2	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0008	1451	2	0	1	0	1	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0009	1451	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0010	1451	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0011	1439	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0012	1451	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0013	1451	1	0	0	0	0	1	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0014	1451	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0015	1451	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0016	1451	1	0	0	1	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	t0017	1451	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637