JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A5_chr17_75082954_75111162	0/0	t0006	423	1	0	0	1	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0007	423	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0008	423	1	0	0	1	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A6_chr17_68262026_68296127	0/1	t0001	2117	128	13	24	69	6	15	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0002	2120	82	3	10	53	3	13	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0003	2117	66	18	17	18	3	10	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0004	2117	38	1	8	24	0	5	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	1/0	t0005	2120	25	8	10	0	4	2	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0006	2118	10	8	2	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0007	2119	10	7	2	0	1	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0008	2117	7	4	3	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0009	2117	7	6	1	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0010	2117	4	4	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0011	2117	4	3	1	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0012	2112	3	3	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0013	2117	3	1	2	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0014	2117	3	3	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0015	2117	2	1	0	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0016	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0017	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0018	2118	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0019	2120	1	0	0	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0020	2117	1	0	0	0	1	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0021	2120	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0022	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0023	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0024	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0025	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0026	2120	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0027	2117	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0028	2117	1	0	0	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0029	2117	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0030	2121	1	0	0	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	t0031	2117	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A7_chr12_59591029_59794841	0/1	t0001	10500	43	6	8	25	1	2	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	1/0	t0002	10500	42	6	7	21	2	5	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0003	10500	35	7	6	16	0	6	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0004	10500	23	2	1	16	1	3	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0005	10513	18	3	1	5	0	9	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0006	10515	15	14	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0007	10500	14	5	5	4	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0008	10500	6	5	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0009	10500	6	4	2	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0010	10500	4	0	2	1	0	1	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0011	10501	4	0	0	4	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0012	10519	4	4	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0013	10500	3	3	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0014	10500	3	0	0	3	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0015	10515	2	2	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0016	10500	2	0	0	2	0	0	copy fasta	SLC16A7	chr12	59591029	59794841