JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A7_chr12_59591029_59794841	0/0	t0017	10500	2	0	0	2	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0018	10500	2	0	0	2	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0019	10519	2	2	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0020	10514	2	2	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0021	10515	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0022	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0023	10500	1	0	0	0	1	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0024	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0025	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0026	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0027	10501	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0028	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0029	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0030	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0031	10500	1	0	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0032	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0033	10500	1	0	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0034	10500	1	0	0	0	1	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0035	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0036	10500	1	0	0	0	0	1	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0037	10500	1	0	0	0	0	1	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0038	10500	1	0	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0039	10500	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0040	10511	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0041	10503	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0042	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0043	10500	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0044	10500	1	0	1	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0045	10502	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0046	10502	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0047	10504	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	t0048	10516	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A8_chr22_38073137_38089184	1/0	t0001	777	361	66	55	181	14	44	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/1	t0002	777	69	28	23	10	4	3	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0003	775	6	0	0	6	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0004	774	5	0	0	5	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0005	777	3	3	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0006	777	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0007	777	2	2	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0008	777	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0009	777	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	t0010	777	1	0	0	0	0	1	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A9_chr10_59645764_59714850	0/0	t0001	2421	76	2	12	53	1	8	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0002	2417	59	14	12	31	0	2	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0003	2420	44	6	16	11	4	7	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/1	t0004	2419	21	6	8	0	2	4	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	1/0	t0005	2417	18	13	2	0	2	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0006	2421	17	2	1	11	1	2	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0007	2419	14	12	2	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0008	2421	14	2	2	10	0	0	copy fasta	SLC16A9	chr10	59645764	59714850