JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC30A9_chr4_41985530_42095461	0/0	t0009	4458	4	0	2	2	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0010	4464	4	4	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0011	4458	3	3	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0012	4461	2	2	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0013	4461	2	2	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0014	4461	2	2	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0015	4460	2	2	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0016	4460	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0017	4460	1	0	0	1	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0018	4462	1	0	0	0	0	1	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0019	4461	1	0	0	0	1	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0020	4460	1	0	0	0	0	1	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0021	4461	1	0	1	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0022	4458	1	0	1	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0023	4459	1	0	1	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0024	4458	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0025	4458	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	t0026	4460	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC31A1_chr9_113216544_113269492	0/0	t0001	4190	61	8	12	33	2	6	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	1/0	t0002	4190	46	8	9	20	1	7	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0003	4190	34	0	5	19	3	7	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0004	4198	30	1	0	29	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0005	4196	23	1	2	14	1	5	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0006	4194	20	0	5	15	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0007	4192	19	0	3	10	1	5	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0008	4192	18	10	2	5	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0009	4192	15	1	1	13	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0010	4194	9	0	5	1	1	2	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0011	4190	8	0	0	8	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0012	4198	7	0	0	6	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0013	4202	6	3	2	0	1	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0014	4200	6	0	0	6	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0015	4194	6	2	0	4	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0016	4194	6	6	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0017	4192	6	0	5	0	1	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0018	4192	4	4	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0019	4192	4	4	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0020	4194	3	3	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0021	4200	3	2	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0022	4198	3	0	3	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0023	4196	3	0	0	2	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0024	4196	3	0	0	3	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0025	4194	3	0	0	3	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0026	4194	3	3	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0027	4190	3	3	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0028	4192	3	2	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0029	4204	2	0	1	0	1	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0030	4202	2	2	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0031	4198	2	2	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0032	4198	2	1	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492