JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC31A1_chr9_113216544_113269492	0/0	t0033	4194	2	0	2	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0034	4194	2	1	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0035	4192	2	2	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0036	4192	2	0	0	1	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0037	4192	2	0	2	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0038	4190	2	0	0	0	0	2	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0039	4190	2	1	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0040	4190	2	2	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0041	4190	2	0	0	2	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0042	4190	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/1	t0043	4208	1	0	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0044	4206	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0045	4204	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0046	4202	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0047	4202	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0048	4198	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0049	4198	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0050	4198	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0051	4198	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0052	4198	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0053	4196	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0054	4196	1	0	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0055	4196	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0056	4196	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0057	4196	1	0	0	0	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0058	4194	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0059	4194	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0060	4194	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0061	4194	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0062	4194	1	0	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0063	4194	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0064	4192	1	0	0	0	1	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0065	4192	1	0	1	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0066	4192	1	0	0	0	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0067	4192	1	0	0	0	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0068	4192	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0069	4190	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0070	4190	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0071	4190	1	0	0	0	0	1	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0072	4190	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0073	4190	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0074	4190	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0075	4190	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0076	4190	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0077	4190	1	0	0	0	1	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	t0078	4194	1	1	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A2_chr9_113146007_113169140	0/0	t0001	1287	98	18	23	38	7	12	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0002	1291	75	10	11	53	0	1	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	t0003	1291	66	2	12	45	1	6	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	1/1	t0004	1292	62	19	12	22	3	4	copy fasta	SLC31A2	chr9	113146007	113169140