JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC6A9_chr1_43991483_44036462	0/0	t0003	1305	31	0	4	24	0	3	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0004	1305	9	9	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0005	1305	3	3	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0006	1305	2	2	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0007	1305	2	2	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0008	1305	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0009	1305	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0010	1305	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0011	1305	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0012	1305	1	0	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0013	1305	1	0	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0014	1305	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0015	1305	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	t0016	1305	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC7A10_chr19_33203664_33230850	0/1	t0001	376	225	42	57	76	13	36	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	1/0	t0002	375	131	24	12	86	4	4	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	t0003	376	48	29	3	8	1	7	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	t0004	376	2	2	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	t0005	376	2	2	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	t0006	375	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	t0007	376	1	0	0	0	0	1	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A11_chr4_138159097_138247349	0/1	t0001	8140	28	1	7	15	2	2	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0002	8140	17	0	0	15	0	2	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0003	8140	17	4	7	2	1	3	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0004	8138	10	0	0	10	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	1/0	t0005	8140	9	6	1	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0006	8142	8	0	0	7	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0007	8152	8	0	0	8	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0008	8150	6	0	2	4	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0009	8140	6	6	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0010	8154	5	1	2	0	0	2	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0011	8154	5	0	1	4	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0012	8142	5	0	0	5	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0013	8141	4	0	3	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0014	8139	4	0	0	3	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0015	8152	4	3	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0016	8142	4	0	2	1	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0017	8146	3	0	3	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0018	8150	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0019	8141	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0020	8142	3	0	1	1	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0021	8140	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0022	8164	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0023	8142	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0024	8143	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0025	8143	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0026	8139	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0027	8142	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0028	8137	3	0	2	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0029	8142	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349