JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A11_chr4_138159097_138247349	0/0	t0030	8140	3	0	3	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0031	8142	3	0	0	3	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0032	8139	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0033	8158	2	0	0	0	0	2	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0034	8144	2	0	1	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0035	8144	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0036	8146	2	0	1	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0037	8147	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0038	8146	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0039	8152	2	0	0	0	0	2	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0040	8146	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0041	8148	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0042	8152	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0043	8154	2	0	0	2	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0044	8144	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0045	8142	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0046	8140	2	0	1	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0047	8140	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0048	8140	2	0	1	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0049	8186	2	0	2	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0050	8150	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0051	8166	2	0	0	1	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0052	8160	2	0	0	0	2	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0053	8146	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0054	8144	2	1	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0055	8138	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0056	8140	2	2	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0057	8141	2	0	0	0	2	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0058	8090	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0059	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0060	8144	1	0	0	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0061	8146	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0062	8150	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0063	8138	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0064	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0065	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0066	8141	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0067	8142	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0068	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0069	8138	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0070	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0071	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0072	8143	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0073	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0074	8140	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0075	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0076	8152	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0077	8162	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0078	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0079	8147	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349