JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A11_chr4_138159097_138247349	0/0	t0080	8138	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0081	8136	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0082	8140	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0083	8136	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0084	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0085	8138	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0086	8150	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0087	8144	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0088	8144	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0089	8140	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0090	8146	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0091	8148	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0092	8150	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0093	8152	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0094	8153	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0095	8152	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0096	8155	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0097	8156	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0098	8158	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0099	8154	1	0	0	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0100	8154	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0101	8159	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0102	8156	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0103	8147	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0104	8144	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0105	8139	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0106	8150	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0107	8148	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0108	8152	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0109	8150	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0110	8152	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0111	8154	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0112	8150	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0113	8154	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0114	8155	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0115	8137	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0116	8143	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0117	8158	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0118	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0119	8141	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0120	8142	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0121	8140	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0122	8138	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0123	8142	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0124	8141	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0125	8142	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0126	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0127	8139	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0128	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0129	8136	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349