JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A11_chr4_138159097_138247349	0/0	t0130	8139	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0131	8138	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0132	8138	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0133	8139	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0134	8138	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0135	8138	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0136	8142	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0137	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0138	8137	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0139	8139	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0140	8140	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0141	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0142	8141	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0143	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0144	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0145	8143	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0146	8142	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0147	8142	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0148	8144	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0149	8146	1	0	0	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0150	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0151	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0152	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0153	8144	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0154	8142	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0155	8150	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0156	8160	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0157	8160	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0158	8165	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0159	8164	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0160	8166	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0161	8166	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0162	8137	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0163	8136	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0164	8138	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0165	8144	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0166	8148	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0167	8147	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0168	8154	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0169	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0170	8162	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0171	8166	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0172	8138	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0173	8141	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0174	8144	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0175	8143	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0176	8142	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0177	8142	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0178	8152	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0179	8153	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349