JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC7A11_chr4_138159097_138247349	0/0	t0180	8140	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0181	8137	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0182	8142	1	0	0	1	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0183	8140	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	t0184	8148	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A13_chr8_86209063_86235381	1/1	t0001	455	297	74	59	128	8	26	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0002	448	95	4	12	58	0	21	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0003	455	32	22	3	6	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0004	455	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0005	455	1	0	0	1	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0006	455	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	t0007	455	1	0	0	1	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A14_chr3_170454548_170591075	0/0	t0001	7826	58	6	11	25	3	13	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	1/0	t0002	7825	52	1	17	23	3	7	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0003	7824	43	1	11	23	1	7	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0004	7826	40	1	8	23	2	6	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0005	7824	13	13	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0006	7826	10	4	0	6	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0007	7824	9	4	1	4	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0008	7824	7	7	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0009	7825	6	6	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0010	7824	4	0	0	4	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0011	7824	4	4	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0012	7826	3	0	0	3	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0013	7828	3	3	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0014	7828	3	2	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0015	7826	3	3	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0016	7825	3	2	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0017	7824	3	3	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0018	7825	3	3	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0019	7824	3	3	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0020	7826	2	0	0	0	2	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0021	7826	2	0	1	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0022	7825	2	2	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0023	7824	2	2	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0024	7824	2	2	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0025	7826	2	2	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0026	7824	2	0	0	0	0	2	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0027	7826	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0028	7826	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0029	7826	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0030	7826	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0031	7826	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0032	7826	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0033	7826	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0034	7826	1	0	0	0	1	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0035	7814	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0036	7825	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0037	7825	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	t0038	7825	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075