JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN11_chr17_35345305_35378621	0/0	t0014	2435	4	4	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0015	2435	3	3	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0016	2435	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0017	2435	3	0	0	3	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0018	2435	2	0	0	0	0	2	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0019	2435	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0020	2435	2	0	0	2	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0021	2435	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0022	2435	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0023	2435	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0024	2435	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0025	2435	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	t0026	2435	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN12L_chr17_35459254_35542678	0/0	t0001	11381	30	2	7	17	2	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0002	11344	25	10	7	5	1	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0003	11338	22	0	3	19	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0004	11381	20	1	2	17	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0005	11346	19	2	1	16	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0006	11380	10	1	0	9	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0007	11340	9	1	0	3	0	5	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0008	11339	8	1	4	3	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0009	11338	8	0	0	6	0	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0010	11344	7	0	6	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0011	11381	6	0	1	3	1	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0012	11380	6	0	0	6	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0013	11340	4	0	3	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0014	11340	4	0	4	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0015	11338	4	1	1	1	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0016	11338	4	0	2	1	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0017	11345	4	1	0	3	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0018	11343	4	3	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0019	11344	3	0	1	0	2	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0020	11344	3	1	2	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0021	11346	3	0	0	3	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0022	11340	3	2	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0023	11381	3	3	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0024	11342	3	0	0	3	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0025	11345	3	0	1	0	1	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0026	11381	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0027	11338	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0028	11343	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0029	11344	2	0	1	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/1	t0030	11343	2	0	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0031	11381	2	0	0	0	0	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0032	11380	2	0	0	2	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0033	11381	2	0	0	2	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0034	11381	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0035	11382	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0036	11346	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0037	11345	2	0	0	2	0	0	copy fasta	SLFN12L	chr17	35459254	35542678