JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN12L_chr17_35459254_35542678	0/0	t0038	11340	2	0	0	0	0	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0039	11339	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0040	11341	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0041	11381	2	0	1	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0042	11382	2	0	0	2	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0043	11381	2	0	0	2	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0044	11341	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0045	11344	2	2	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0046	11344	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0047	11346	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0048	11340	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0049	11381	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0050	11343	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0051	11346	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0052	11345	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0053	11340	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0054	11378	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0055	11338	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0056	11345	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0057	11381	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0058	11380	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0059	11381	1	0	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0060	11341	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0061	11340	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0062	11342	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0063	11339	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0064	11340	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0065	11340	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0066	11345	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	1/0	t0067	11381	1	0	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0068	11381	1	0	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0069	11344	1	0	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0070	11344	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0071	11344	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0072	11380	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0073	11381	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0074	11381	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0075	11342	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0076	11346	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0077	11338	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0078	11344	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0079	11342	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0080	11380	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0081	11381	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0082	11344	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0083	11341	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0084	11344	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0085	11381	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0086	11381	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0087	11339	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678