JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLFN12L_chr17_35459254_35542678	0/0	t0088	11346	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0089	11346	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0090	11346	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0091	11346	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0092	11346	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0093	11340	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0094	11342	1	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0095	11339	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0096	11340	1	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0097	11338	1	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0098	11339	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0099	11339	1	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0100	11339	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0101	11339	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0102	11343	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0103	11339	1	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0104	11337	1	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0105	11343	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0106	11382	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0107	11382	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0108	11381	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0109	11381	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0110	11381	1	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0111	11337	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0112	11378	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0113	11340	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0114	11338	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0115	11339	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0116	11338	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0117	11342	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0118	11338	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0119	11379	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0120	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0121	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0122	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0123	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0124	11380	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0125	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0126	11342	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0127	11380	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0128	11338	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0129	11339	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0130	11344	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0131	11343	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0132	11360	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0133	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0134	11381	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0135	11345	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0136	11382	1	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0137	11344	1	0	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678