JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN13_chr17_35430096_35453766	0/0	t0029	5704	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0030	5711	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0031	5710	2	0	0	1	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0032	5712	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0033	5707	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0034	5707	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0035	5708	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0036	5707	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0037	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0038	5709	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0039	5709	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0040	5705	1	0	0	0	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0041	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0042	5711	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0043	5710	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0044	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0045	5709	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0046	5710	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0047	5709	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0048	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0049	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0050	5704	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0051	5704	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0052	5699	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0053	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0054	5700	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0055	5705	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0056	5708	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0057	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0058	5709	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0059	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0060	5706	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0061	5710	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0062	5709	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0063	5710	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0064	5707	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0065	5707	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0066	5708	1	0	0	0	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0067	5704	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0068	5704	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0069	5706	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0070	5705	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0071	5705	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0072	5709	1	0	0	0	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0073	5705	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0074	5705	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0075	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0076	5705	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0077	5705	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0078	5706	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766