JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN13_chr17_35430096_35453766	0/0	t0079	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0080	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0081	5677	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0082	5710	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0083	5713	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0084	5712	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0085	5707	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0086	5702	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0087	5705	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0088	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0089	5707	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0090	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0091	5706	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0092	5706	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN14_chr17_35538985_35565819	0/0	t0001	4431	103	3	24	60	4	12	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0002	4431	67	9	17	35	0	6	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0003	4427	42	1	0	36	1	4	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0004	4432	42	16	1	24	0	1	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	1/0	t0005	4431	39	0	6	27	1	4	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0006	4431	21	19	2	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/1	t0007	4432	21	0	6	3	5	6	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0008	4435	12	1	4	0	2	5	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0009	4431	6	6	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0010	4434	6	3	3	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0011	4431	5	5	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0012	4431	5	5	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0013	4433	4	4	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0014	4431	4	0	0	4	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0015	4430	4	2	2	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0016	4430	4	0	1	3	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0017	4433	4	0	1	1	0	2	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0018	4431	3	0	0	3	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0019	4430	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0020	4430	2	1	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0021	4431	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0022	4433	2	0	0	2	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0023	4431	2	0	0	2	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0024	4435	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0025	4433	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0026	4432	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0027	4433	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0028	4430	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0029	4431	1	0	0	0	1	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0030	4428	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0031	4432	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0032	4433	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0033	4431	1	0	0	0	1	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0034	4430	1	0	0	0	1	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0035	4431	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	t0036	4430	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819